Keto Mini Cheesecake Bites

Featured in Reliable Dessert Recipes.

Enjoy these creamy, protein-rich mini cheesecake bites made with keto-friendly ingredients like cottage cheese, almond flour, and Greek yogurt. They’re easy to make by blending a smooth, rich filling and pairing it with a buttery, crumbly almond crust. Bake them in mini muffin tins for perfectly portioned treats, and refrigerate to set. Top with fresh berries or whipped cream for a decadent yet healthy dessert that’s low in carbs and high in flavor!

Chef Zaho
Updated on Thu, 17 Apr 2025 19:14:40 GMT
A dessert with a raspberry and blackberry on top. Pin it
A dessert with a raspberry and blackberry on top. | alicesrecipes.com

This mini protein keto cottage cheese cheesecake recipe transforms simple ingredients into decadent bite-sized treats without the guilt. Perfect for satisfying sweet cravings while staying on track with your keto or low-carb lifestyle, these cheesecakes deliver all the creamy richness you expect but with added protein benefits.

I created these mini cheesecakes during a particularly challenging diet phase when I was craving something sweet but needed to keep my macros in check. Now they've become my go-to dessert for both everyday treats and when entertaining health-conscious friends.

Ingredients

  • Cottage cheese: Provides the perfect creamy base while adding significant protein content
  • Greek yogurt: Enhances the tangy flavor profile while contributing additional protein
  • Large eggs: Act as natural binders giving structure to these delicate treats
  • Almond flour: Creates a nutty gluten-free crust alternative with minimal carbs
  • Melted butter: Helps bind the crust and adds rich flavor
  • Powdered erythritol: Delivers sweetness without spiking blood sugar
  • Vanilla extract: Balances the tanginess with warm aromatic notes
  • Salt: Enhances all flavors and balances the sweetness
  • Fresh berries (optional): For a colorful antioxidant-rich topping

Step-by-Step Instructions

Prepare Your Oven and Pan:
Preheat your oven to exactly 325°F as this moderate temperature prevents the cheesecakes from cracking. Line each cup of your mini muffin tin with paper liners, making sure they're pressed firmly into the corners for even baking.
Blend The Filling:
Add cottage cheese, Greek yogurt, eggs, erythritol, vanilla extract, and salt to your blender or food processor. Run on high speed for 60-90 seconds, stopping once to scrape down the sides. The mixture should transform from lumpy to completely smooth with no visible cottage cheese curds.
Create The Crust:
Mix almond flour and melted butter in a medium bowl, using a fork to combine thoroughly. The mixture should resemble wet sand that holds together when pressed between your fingers. If it seems too dry, add an additional teaspoon of melted butter.
Form The Base:
Spoon approximately one teaspoon of the almond flour mixture into each muffin cup. Use the back of a measuring teaspoon or your fingers to press down firmly, creating a compact even layer across the bottom of each cup.
Fill The Cups:
Pour or spoon the cottage cheese mixture over each crust, filling each cup about 90% full. The cheesecakes will rise slightly during baking but settle as they cool.
Bake To Perfection:
Place the muffin tin in the center rack of your preheated oven and bake for 15-20 minutes. The tops should appear set but will still have a slight jiggle in the center. Avoid overbaking as this can cause the texture to become dry.
Cool And Set:
Remove from the oven and allow the cheesecakes to cool in the pan for 15 minutes before transferring to the refrigerator. Chill for at least 2 hours or preferably overnight to develop the best texture and flavor.
A slice of cheesecake with a raspberry on top. Pin it
A slice of cheesecake with a raspberry on top. | alicesrecipes.com

The cottage cheese is truly the star ingredient here. When I first tried using it in cheesecake, I was skeptical, but the blending process transforms those humble curds into something remarkably similar to traditional cream cheese filling, but with added nutritional benefits that make these little treats practically virtuous.

Making Ahead and Storage

These mini cheesecakes actually improve with time as the flavors meld together in the refrigerator. For best results, make them a day before serving. Store in an airtight container in the refrigerator for up to 5 days. If freezing, wrap each cooled cheesecake individually in plastic wrap, then place in a freezer bag. Thaw overnight in the refrigerator before serving.

A dessert with a raspberry on top. Pin it
A dessert with a raspberry on top. | alicesrecipes.com

Flavor Variations

The beauty of this basic recipe is how easily it can be customized. Add 1 tablespoon of lemon zest and 2 tablespoons of lemon juice for a citrus version. For chocolate lovers, incorporate 2 tablespoons of unsweetened cocoa powder into the filling. Spice enthusiasts might enjoy adding ½ teaspoon of cinnamon and a pinch of nutmeg for a warming twist. Each variation adds minimal carbs while completely transforming the flavor profile.

Nutritional Benefits

These mini cheesecakes offer substantial nutritional advantages over traditional desserts. The combination of cottage cheese and Greek yogurt creates a protein-rich base that helps stabilize blood sugar and provides lasting satiety. The almond flour crust delivers healthy fats and fiber, while keeping carbohydrates minimal. Each serving contains approximately 120 calories, 8g protein, 9g fat, and only 3g net carbs, making them suitable for various dietary approaches beyond just keto.

Serving Suggestions

While these cheesecakes are delicious on their own, they can be elevated with thoughtful toppings. A light dusting of additional powdered erythritol adds sweetness and visual appeal. Fresh berries provide a juicy contrast to the creamy filling. For special occasions, a dollop of whipped heavy cream or coconut cream turns these into elegant desserts. Serve them slightly chilled rather than cold from the refrigerator to allow the full flavor to come through.

Frequently Asked Questions

→ Can I use a different base flour?

Yes, you can substitute almond flour with coconut flour but use only half the amount, as coconut flour absorbs more liquid.

→ Can I use a different sweetener?

Absolutely! Replace powdered erythritol with monk fruit, stevia, or your preferred keto-friendly sweetener. Adjust to taste.

→ How do I know when the cheesecakes are done?

The mini cheesecakes are ready when the tops are set and slightly golden. They should not jiggle excessively in the center.

→ How should I store these cheesecakes?

Store the cheesecakes in an airtight container in the refrigerator for up to 5 days. Avoid leaving them out for extended periods.

→ Can I freeze these cheesecakes?

Yes, you can freeze them. Store in a freezer-safe container for up to 2 months. Thaw in the fridge before serving.

Mini Keto Cheesecake Bites

Creamy, low-carb mini cheesecakes made with almond flour crust and cottage cheese. Simple and delicious!

Prep Time
10 Minutes
Cook Time
20 Minutes
Total Time
30 Minutes
By: Fati Zaho

Category: Desserts

Difficulty: Intermediate

Cuisine: Keto

Yield: 12 Servings (12 mini cheesecakes)

Dietary: Low-Carb, Vegetarian, Gluten-Free

Ingredients

01 1 cup full-fat or low-fat cottage cheese
02 1/2 cup unsweetened Greek yogurt
03 2 large eggs
04 1/4 cup almond flour
05 2 tablespoons melted butter
06 1/4 cup powdered erythritol
07 1 teaspoon vanilla extract
08 1/4 teaspoon salt
09 Fresh berries or whipped cream for topping (optional)

Instructions

Step 01

Preheat the oven to 325°F (165°C) and line a mini muffin tin with paper liners.

Step 02

In a blender or food processor, blend the cottage cheese, Greek yogurt, eggs, erythritol, vanilla extract, and salt until smooth and creamy.

Step 03

In a separate bowl, combine the almond flour and melted butter. Mix until crumbly.

Step 04

Spoon the almond flour mixture into the bottom of each muffin cup and press down lightly to form a crust.

Step 05

Pour the cottage cheese mixture over the crusts, filling each muffin cup.

Step 06

Bake for 15-20 minutes, or until the cheesecakes are set and slightly golden on top.

Step 07

Allow the cheesecakes to cool, then refrigerate for at least 2 hours before serving.

Tools You'll Need

  • Mini muffin tin
  • Paper liners
  • Blender or food processor
  • Mixing bowl

Allergy Information

Please check ingredients for potential allergens and consult a health professional if in doubt.
  • Dairy
  • Eggs
  • Almonds (nuts)

Nutrition Facts (Per Serving)

It is important to consider this information as approximate and not to use it as definitive health advice.
  • Calories: 120
  • Total Fat: 9 g
  • Total Carbohydrate: 3 g
  • Protein: 6 g